Publication Archive - Origins Center

Evolution of multicellularity by collective integration of spatial information

Auteurs

Enrico Sandro Colizzi, Renske MA Vroomans and Roeland MH Merks

Publicatie

eLife, October 2020

Link naar publicatie

The Impact of Life on Climate Stabilization Over Different Timescales

Auteurs

Dennis Hönning

Publicatie

Geochemistry, Geophysics, Geosystems, September 2020

Link naar publicatie

Carbon Cycling and Habitability of Massive Earth-like Exoplanets

Auteurs

Amanda Kruijver, Dennis Höning and Wim van Westrenen

Publicatie

The Planetary Science Journal, October 2021

Link naar publicatie

DNA-based communication in populations of synthetic protocells

Auteurs

Alex Joesaar, Shuo Yang, Bas Bögels, Ardjan van der Linden, Pascal Pieters, B. V. V. S. Pavan Kumar, Neil Dalchau, Andrew Phillips, Stephen Mann & Tom F. A. de Greef

Publicatie

Nature, 4 March 2019

Link naar publicatie

Early Habitability and Crustal Decarbonation of a Stagnant-Lid Venus

Auteurs

D. Höning, P. Baumeister, J. L. Grenfell, N. Tosi, M. J. Way

Publicatie

17 September 2021

Link naar publicatie

Chemical Fueling Enables Molecular Complexification of Self-Replicators

Auteurs

Shuo Yang, Dr. Gael Schaeffer, Dr. Elio Mattia, Dr. Omer Markovitch, Dr. Kai Liu, Andreas S. Hussain, Jim Ottelé, Ankush Sood, Prof. Dr. Sijbren Otto

Publicatie

Angewandte Chemie, 10 March 2021

Link naar publicatie

Interaction of Aromatic Molecules with Forsterite: Accuracy of the Periodic DFT-D4 Method

Auteurs

Dario Campisi, Thanja Lamberts, Nelson Y. Dzade, Rocco Martinazzo, Inge Loes ten Kate, and Alexander G. G. M. Tielens

Publicatie

The Journal of Physical Chemistry A, 30 March 2021

Link naar publicatie

Changes in CO2 Adsorption Affinity Related to Ni Doping in FeS Surfaces: A DFT-D3 Study

Auteurs

Aleksandar Živković, Michiel Somers, Eloi Camprubi, Helen E. King, Mariette Wolthers and Nora H. de Leeuw

Publicatie

MDPI, 10 April 2021

Link naar publicatie

The role of planetary interior in the long-term evolution ofatmospheric CO2on Earth-like exoplanets

Auteurs

M. Oosterloo, D. Höning, I. E. E. Kamp, F. F. S. van der Tak

Publicatie

Astronomy & Astrophysics, March 2021

Link naar publicatie

Emergent order in a continuous state adaptive network model of living systems

Auteurs

Carsten T. van de Kamp, George Dadunashvili, Johan L.A. Dubbeldam, Timon Idema

Publicatie

March 2021

Link naar publicatie

Finite representation of reaction kinetics in unbounded biopolymer structures

Auteurs

Yuliia Orlova, Alessa A. Gambardella, Rebecca E. Harmon, Ivan Kryven, Piet D. Iedema

Publicatie

Chemical Engineering Journal, 1 February 2021

Link naar publicatie

Temperature inversions on hot super-Earths: the case of CN in nitrogen-rich atmospheres

Auteurs

Mantas Zilinskas, Yamila Miguel, Yipeng Lyu, Morris Bax

Publicatie

Monthly Notices of the Royal Astronomical Society, January 2021

Link naar publicatie

Emergence of low-symmetry foldamers from single monomers

Auteurs

Charalampos G. Pappas, Pradeep K. Mandal, Bin Liu, Brice Kauffmann, Xiaoming Miao, Dávid Komáromy, Waldemar Hoffmann, Christian Manz, Rayoon Chang, Kai Liu, Kevin Pagel, Ivan Huc & Sijbren Otto

Publicatie

Nature Chemistry, 20 November 2020

Link naar publicatie

Hierarchical Multivalent Effects Control Influenza Host Specificity

Auteurs

Nico J. Overeem, P. H. Erik Hamming, Oliver C. Grant, Daniele Di Iorio, Malte Tieke, M. Candelaria Bertolino, Zeshi Li, Gaël Vos, Robert P. de Vries, Robert J. Woods, Nicholas B. Tito, Geert-Jan P. H. Boons, Erhard van der Vries, and Jurriaan Huskens

Publicatie

ACS central science, 12 November 2020

Link naar publicatie

Timing the origin of eukaryotic cellular complexity with ancient duplications

Auteurs

Julian Vosseberg, Jolien J. E. van Hooff, Marina Marcet-Houben, Anne van Vlimmeren, Leny M. van Wijk, Toni Gabaldón & Berend Snel

Publicatie

Nature Ecology & Evolution, 26 October 2020

Link naar publicatie

Evolution of multicellularity by collective integration of spatial information

Auteurs

Enrico Sandro Colizzi, Renske MA Vroomans, Roeland MH Merks

Publicatie

eLife, October 22, 2020

Link naar publicatie

How to Understand Cells Well Enough to Predict Evolution: Polarity Establishment in Budding Yeast as a Case Study

Auteurs

W.G. Daalman, E. Sweep, L. Laan

Publicatie

1 October 2020

Link naar publicatie

Measuring the atomic composition of planetary building blocks

Auteurs

M.K. McClure, C. Dominik, M. Kama

Publicatie

Astronomy & Astrophysics, October 2020

Link naar publicatie

DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Auteurs

Rampal Etienne, Luis Lima Valente, Albert B. Phillimore, Bart Haegeman, Joshua Lambert, Pedro Neves, Shu Xie, Richèl Bilderbeek, Torsten Hauffe, Giovanni Laudanno, Nadiah Kristensen, Raphaël Scherrer

Publicatie

Comprehensive R Archive Network, 27 September 2020

Link naar publicatie

Adaptability and evolution of the cell polarization machinery in budding yeast

Auteurs

Fridtjof Brauns, Leila M. Iñigo de la Cruz, Werner K.-G. Daalman, Ilse de Bruin, Jacob Halatek, Liedewij Laan, Erwin Frey

Publicatie

bioRxiv, 10 September 2020

Link naar publicatie

Perspective: Science policy through public engagement

Auteurs

Rafael Loureiro, Omer Markovitch, Crystal S Riley, H James Cleaves, II, I Haritina Mogoșanu, Ivan G Paulino-Lima, Jeffrey J Marlow, Sanjoy M Som

Publicatie

3 Sept. 2020

Link naar publicatie

Recurrent sequence evolution after independent gene duplication

Auteurs

Samuel H. A. von der Dunk & Berend Snel

Publicatie

BMC evolutionary biology, 8 August 2020

Link naar publicatie

Estimated Minimum Life Span of the Jezero Fluvial Delta (Mars)

Auteurs

Francesco Salese, Maarten G. Kleinhans, Nicolas Mangold, Veronique Ansan, William McMahon, Tjalling de Haas, and Gilles Dromart

Publicatie

Astrobiology, 6 August 2020

Link naar publicatie

Caught in the Act: Mechanistic Insight into Supramolecular Polymerization-Driven Self-Replication from Real-Time Visualization

Auteurs

Sourav Maity, Jim Ottele, Guillermo Monreal Santiago, Pim W. J. M. Frederix, Peter Kroon, Omer Markovitch, Marc C. A. Stuart, Siewert J. Marrink, Sijbren Otto, and Wouter H. Roos

Publicatie

31 July 2020

Link naar publicatie

From self-replication to replicator systems en route to de novo life

Auteurs

Paul Adamski, Marcel Eleveld, Ankush Sood, Ádám Kun, András Szilágyi, Tamás Czárán, Eörs Szathmáry & Sijbren Otto

Publicatie

Nature Reviews Chemistry, 1 July 2020

Link naar publicatie

Chance emergence of catalytic activity and promiscuity in a self-replicator

Auteurs

Jim Ottelé, Andreas S. Hussain, Clemens Mayer & Sijbren Otto

Publicatie

Nature Catalysis, 26 June 2020

Link naar publicatie

Emergence of light-driven protometabolism on recruitment of a photocatalytic cofactor by a self-replicator

Auteurs

Guillermo Monreal Santiago, Kai Liu, Wesley R. Browne & Sijbren Otto

Publicatie

Nature Chemistry, 26 June 2020

Link naar publicatie

Shannon Entropy as an Indicator for Sorting Processes in Hydrothermal Systems

Auteurs

Frank J. A. van Ruitenbeek, Jasper Goseling, Wim H. Bakker and Kim A. A. Hein

Publicatie

Entropy, 13 June 2020

Link naar publicatie

Enrichment of the HR 8799 planets by minor bodies and dust

Auteurs

K. Frantseva, M. Mueller, P. Pokorný, F. F. S. van der Tak and I. L. ten Kate

Publicatie

Astronomy & Astrophysics 10 June 2020

Link naar publicatie

Pleiotropy allows recovery of phenotypic plasticity in constant environments

Auteurs

Enzo Kingma, Eveline T. Diepeveen, Leila Iñigo de la Cruz, Liedewij Laan

Publicatie

bioRxiv, 2 June 2020

Link naar publicatie

Classification of link-breaking and link-creation updating rules in susceptible-infected-susceptible epidemics on adaptive networks

Auteurs

Massimo A. Achterberg, Johan L. A. Dubbeldam, Cornelis J. Stam, and Piet Van Mieghem

Publicatie

Physical Review E, 4 May 2020

Link naar publicatie

Atmospheric compositions and observability of nitrogen-dominated ultra-short-period super-Earths

Auteurs

Mantas Zilinskas, Yamila Miguel, Paul Mollière, Shang-Min Tsai

Publicatie

Monthly Notices of the Royal Astronomical Society, May 2020

Link naar publicatie

Harnessing ecological and evolutionary principles to guide the design of microbial production consortia

Auteurs

Samir Giri, Shraddha Shitut, Christian Kost

Publicatie

1 April 2020

Link naar publicatie

Recruitment of receptors at supported lipid bilayers promoted by the multivalent binding of ligand-modified unilamellar vesicles

Auteurs

Daniele Di Iorio, Yao Lu, Joris Meulman and Jurriaan Huskens

Publicatie

Chemical Science, 9 March 2020

Link naar publicatie

Do defects in PAHs promote catalytic activity in space? Stone–Wales pyrene as a test case

Auteurs

Dario Campisi and Alessandra Candian

Publicatie

Physical Chemistry Chemical Physics, 28 February 2020

Link naar publicatie

Continual evolution through coupled fast and slow feedbacks

Auteurs

Meike T. Wortel, Han Peters, Juan A. Bonachela, and Nils Chr. Stenseth

Publicatie

February 25, 2020

Link naar publicatie

Evolution of multicellularity by collective integration of spatial information

Auteurs

Enrico Sandro Colizzi, Renske M.A. Vroomans, Roeland M.H. Merks

Publicatie

February 20, 2020

Link naar publicatie

A simple dynamic model explains the diversity of island birds worldwide

Auteurs

Luis Valente, Albert B. Phillimore, Martim Melo, Ben H. Warren, Sonya M. Clegg, Katja Havenstein, Ralph Tiedemann, Juan Carlos Illera, Christophe Thébaud, Tina Aschenbach & Rampal S. Etienne

Publicatie

Nature, 19 February 2020

Link naar publicatie

Predicting Evolution Using Regulatory Architecture

Auteurs

Philippe Nghe, Marjon G.J. de Vos, Enzo Kingma, Manjunatha Kogenaru, Frank J. Poelwijk, Liedewij Laan, and Sander J. Tans

Publicatie

Annual review of biophysics, 4 February 2020

Link naar publicatie

Patterning in Mussel Beds Explained by the Interplay of Multi-Level Selection and Spatial Self-Organization

Auteurs

Monique de Jager, Johan van de Koppel, Ellen J. Weerman and Franz J. Weissing

Publicatie

Frontiers in Ecology and Evolution, 30 January 2020

Link naar publicatie

Elementary Growth Modes provide a molecular description of cellular self-fabrication

Auteurs

Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué

Publicatie

PLoS computational biology, 27 January 27 2020

Link naar publicatie

Diverse outcomes of planet formation and composition around low-mass stars and brown dwarfs

Auteurs

Y. Miguel, A. Cridland, C. W. Ormel, J. J. Fortney, S. Ida

Publicatie

Monthly Notices of the Royal Astronomical Society, January 2020

Link naar publicatie

The unstructured linker arms of MutL enable GATC site incision beyond roadblocks during initiation of DNA mismatch repair

Auteurs

Yannicka S. N. Mardenborough, Katerina Nitsenko, Charlie Laffeber, Camille Duboc, Enes Sahin, Audrey Quessada-Vial, Herrie H. K. Winterwerp, Titia K. Sixma, Roland Kanaar, Peter Friedhoff, Terence R. Strick, Joyce H. G. Lebbink

Publicatie

Nucleic acids research, 16 December 2019

Link naar publicatie

Superhydrogenation of pentacene: the reactivity of zigzag-edges

Auteurs

Dario Campisi , Frederik Doktor S. Simonsen, John D. Thrower, Rijutha Jaganathan, Liv Hornekær, Rocco Martinazzo and Alexander G. G. M. Tielens

Publicatie

Physical Chemistry Chemical Physics, 16 December 2019

Link naar publicatie

The Emergence of Life

Auteurs

E. Camprubí, J. W. de Leeuw, C. H. House, F. Raulin, M. J. Russell, A. Spang, M. R. Tirumalai & F. Westall

Publicatie

12 Dec 2019

Link naar publicatie

Carbon depletion observed inside T Tauri inner rims. Formation of icy, kilometer size planetesimals by 1 Myr

Auteurs

M. K. McClure

Publicatie

Astronomy & Astrophysics, December 2019

Link naar publicatie

Percolation clusters of organics in interstellar ice grains as the incubators of life

Auteurs

Saibal Mitra

Publicatie

Progress in biophysics and molecular biology, December 2019

Link naar publicatie

The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints

Auteurs

Daan H. de Groot, Julia Lischke, Riccardo Muolo, Robert Planqué, Frank J. Bruggeman & Bas Teusink

Publicatie

Cellular and Molecular Life Sciences, 22 November 2019

Link naar publicatie

Influenza as a molecular walker

Auteurs

P. H. (Erik) Hamming, Nico J. Overeem and Jurriaan Huskens

Publicatie

Chemical science, 14 November 2019

Link naar publicatie

Transcriptional Mutagenesis Prevents Ribosomal DNA Deterioration: The Role of Duplications and Deletions

Auteurs

Enrico Sandro Colizzi, Paulien Hogeweg

Publicatie

25 October 2019

Link naar publicatie

Charge-Based Separation of Proteins Using Polyelectrolyte Complexes as Models for Membraneless Organelles

Auteurs

Jéré J. van Lente, Mireille M. A. E. Claessens, and Saskia Lindhoud

Publicatie

Biomacromolecules, 16 August 2019

Link naar publicatie

Real-Time Assembly of Viruslike Nucleocapsids Elucidated at the Single-Particle Level

Auteurs

Margherita Marchetti, Douwe Kamsma, Ernesto Cazares Vargas, Armando Hernandez García, Paul van der Schoot, Renko de Vries, Gijs J. L. Wuite, and Wouter H. Roos

Publicatie

Nano letters, 1 August 2019

Link naar publicatie

Microbial evolutionary medicine: from theory to clinical practice

Auteurs

Sandra B. Andersen, B. Jesse Shapiro, Christina Vandenbroucke-Grauls, Marjon G. J. de Vos

Publicatie

The Lancet Infectious Diseases, 1 August 2019

Link naar publicatie

Carbon cycling and interior evolution of water-covered plate tectonics and stagnant-lid planets.

Auteurs

Höning, D., Tosi, N., Spohn, T.

Publicatie

1 July 2019

Link naar publicatie

The ssos Pipeline: Identification of Solar System Objects in Astronomical Images

Auteurs

Max Mahlke, Enrique Solano, Hervé Bouy, Benoit Carry, Gijs A. Verdoes Kleijn, Emmanuel Bertin

Publicatie

Astronomy and Computing, 9 June 2019

Link naar publicatie

Mosaic origin of the eukaryotic kinetochore

Auteurs

Eelco C. Tromer, Jolien J. E. van Hooff, Geert J. P. L. Kops, and Berend Snel

Publicatie

Proceedings of the National Academy of Sciences, 24 May 2019

Link naar publicatie

Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID

Auteurs

Simona V. Antonova, Jeffrey Boeren, H.T. Marc Timmers and Berend Snel

Publicatie

Genes & development, 23 May 2019

Link naar publicatie

Weak Multivalent Binding of Influenza Hemagglutinin Nanoparticles at a Sialoglycan-Functionalized Supported Lipid Bilayer

Auteurs

Daniele Di Iorio, Mark L. Verheijden, Erhard van der Vries, Pascal Jonkheijm, and Jurriaan Huskens

Publicatie

ACS nano, 7 March 2019

Link naar publicatie

Bifurcation in the growth of continental crust

Auteurs

Dennis Höning, Nicola Tosi, Hendrik Hansen-Goos, Tilman Spohn

Publicatie

February 2019

Link naar publicatie

Bond percolation in coloured and multiplex networks

Auteurs

Ivan Kryven

Publicatie

Nature Communications, 24 January 2019

Link naar publicatie

The fluid membrane determines mechanics of erythrocyte extracellular vesicles and is softened in hereditary spherocytosis

Auteurs

Daan Vorselen, Susan M. van Dommelen, Raya Sorkin, Melissa C. Piontek, Jürgen Schiller, Sander T. Döpp, Sander A. A. Kooijmans, Brigitte A. van Oirschot, Birgitta A. Versluijs, Marc B. Bierings, Richard van Wijk, Raymond M. Schiffelers, Gijs J. L. Wuite & Wouter H. Roos

Publicatie

Nature communications, 23 November 2018

Link naar publicatie

Maintaining maximal metabolic flux by gene expression control

Auteurs

Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman

Publicatie

PLoS computational biology, 20 September 2018

Link naar publicatie

Systems protobiology: origin of life in lipid catalytic networks

Auteurs

Doron Lancet, Raphael Zidovetzki and Omer Markovitch

Publicatie

25 juli 2018

Link naar publicatie

A suppression of differential rotation in Jupiter’s deep interior

Auteurs

T. Guillot, Y. Miguel, B. Militzer, W. B. Hubbard, Y. Kaspi, E. Galanti, H. Cao, R. Helled, S. M. Wahl, L. Iess, W. M. Folkner, D. J. Stevenson, J. I. Lunine, D. R. Reese, A. Biekman, M. Parisi, D. Durante, J. E. P. Connerney, S. M. Levin & S. J. Bolton